Information for 2-CAGGCATGAG (Motif 5)


Reverse Opposite:

p-value:1e-3
log p-value:-7.273e+00
Information Content per bp:1.749
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif4.03%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets10.8 +/- 3.6bp
Average Position of motif in Background11.7 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

pros/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAGGCATGAG
-AGNCATG--

INO2/INO2_YPD/1-INO4,2-INO2(Harbison)/Yeast

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAGGCATGAG
---GCATGTG

Pax6/MA0069.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGGCATGAG--
TTCACGCATGAGTT

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGGCATGAG-
AAGGCAAGTGT

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAGGCATGAG----
CGTCACGCATGACTGCA

YAP5(MacIsaac)/Yeast

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGGCATGAG
-AAGCAT---

YAP5/MA0417.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGGCATGAG
-AAGCAT---

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CAGGCATGAG
SCAGYCADGCATGAC

PAX9/MA0781.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CAGGCATGAG----
CGTCACGCATGACTGCA

z/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CAGGCATGAG--
-----TTGAGTG