Information for 2-CTGAGKKTCTCT (Motif 3)


Reverse Opposite:

p-value:1e-3
log p-value:-7.670e+00
Information Content per bp:1.727
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif3.13%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets10.1 +/- 3.5bp
Average Position of motif in Background9.6 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0037.1_Isgf3g_1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGAGKKTCTCT----
-TNAGTTTCGATTTTN

z/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGAGKKTCTCT
-TGAGTG-----

ARG80(MacIsaac)/Yeast

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTGAGKKTCTCT
----GCGTCT--

ARG80/MA0271.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTGAGKKTCTCT
----GCGTCT--

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTGAGKKTCTCT---
---ACTTTCACTTTC

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGAGKKTCTCT----
-TCAGTTTCATTTTCC

NRG1(MacIsaac)/Yeast

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTGAGKKTCTCT
---AGGGTCC--

THI2/THI2_Thi-/[](Harbison)/Yeast

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGAGKKTCTCT
TCTTAGGGTTTC-

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTGAGKKTCTCT---
---AGTTTCAGTTTC

z/dmmpmm(Down)/fly

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTGAGKKTCTCT
-TGAGTG-----