Information for 5-GGKGCKTCGCCC (Motif 10)


Reverse Opposite:

p-value:1e-1
log p-value:-3.883e+00
Information Content per bp:1.621
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.70%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif2.17%
Average Position of motif in Targets12.7 +/- 3.2bp
Average Position of motif in Background11.4 +/- 3.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGKGCKTCGCCC
GGGGATTCCCCC

RAP2-3/MA1051.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGKGCKTCGCCC
--GGCGGCGC--

ERF109/MA1053.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGKGCKTCGCCC
--GGCGGCGC--

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGKGCKTCGCCC--
--GGCCCCGCCCCC

KLF5/MA0599.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGKGCKTCGCCC-
---GCCCCGCCCC

RAP2-6/MA1052.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGKGCKTCGCCC
--GGCGGCGC--

che-1/MA0260.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGKGCKTCGCCC
--GGTTTC----

MA0260.1_che-1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGKGCKTCGCCC
--GGTTTC----

Rel/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGKGCKTCGCCC
NGGGATTCCCC-

Mad/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGKGCKTCGCCC-
---GCGNCGCCNG