Information for 1-YKGCYCRGCCCY (Motif 1)


Reverse Opposite:

p-value:1e-4
log p-value:-9.882e+00
Information Content per bp:1.577
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif8.50%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif2.57%
Average Position of motif in Targets11.1 +/- 3.1bp
Average Position of motif in Background10.6 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:YKGCYCRGCCCY
-TGCCCAGNHW-

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:YKGCYCRGCCCY-
-GGCCCCGCCCCC

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:YKGCYCRGCCCY
--GCTCGGSCTC

PUT3/MA0358.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:YKGCYCRGCCCY
-TTCCCGGG---

SKN7(MacIsaac)/Yeast

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:YKGCYCRGCCCY
-GGCCCGGA---

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:YKGCYCRGCCCY
--GCCNGGGCC-

MAC1/MA0326.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YKGCYCRGCCCY
TTTGCTCA-----

SP1/MA0079.3/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YKGCYCRGCCCY-
--GCCCCGCCCCC

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-YKGCYCRGCCCY
HTTTCCCASG---

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YKGCYCRGCCCY-
-KGCCCTTCCCCA