Information for 1-CCRYTGGCCC (Motif 6)


Reverse Opposite:

p-value:1e-2
log p-value:-5.361e+00
Information Content per bp:1.605
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif5.15%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif1.94%
Average Position of motif in Targets13.9 +/- 4.0bp
Average Position of motif in Background14.0 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCRYTGGCCC
CCGATTGGCT-

PLAG1/MA0163.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCRYTGGCCC-
CCCCCTTGGGCCCC

SKN7/MA0381.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCRYTGGCCC
---NTGGCC-

SIP4/SIP4_SM/9-SIP4(Harbison)/Yeast

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCRYTGGCCC-
TTCCATTCANCCG

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCRYTGGCCC-
TCACCTCTGGGCAG

TCP23/MA1066.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCRYTGGCCC
--GTGGGCCC

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCRYTGGCCC-
TGACCTTTGCCCTA

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCRYTGGCCC--
TGATTGGCTANN

TCP15/MA1062.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCRYTGGCCC
--GTGGGCCC

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCRYTGGCCC-
TGACCTTTGCCCCA