Information for 2-RGGGTYYDGATC (Motif 3)


Reverse Opposite:

p-value:1e-2
log p-value:-5.805e+00
Information Content per bp:1.539
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets13.1 +/- 2.9bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:1
Score:0.62
Offset:7
Orientation:forward strand
Alignment:RGGGTYYDGATC--
-------TGATCTG

GATA15/MA1016.1/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:RGGGTYYDGATC---
------NNGATCANN

GATA8/MA1017.1/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:RGGGTYYDGATC--
-----NNAGATCTN

GAT3/MA0301.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RGGGTYYDGATC-
----NNTAGATCT

GAT4/MA0302.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:RGGGTYYDGATC---
----NNTAGATCTNN

ECM23/MA0293.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:RGGGTYYDGATC---
----NNNAGATCTNN

NRG1(MacIsaac)/Yeast

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RGGGTYYDGATC
AGGGTCC-----

GATA9/MA1018.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:RGGGTYYDGATC---
----TCTAGATCTGT

SRD1/MA0389.1/Jaspar

Match Rank:9
Score:0.58
Offset:7
Orientation:forward strand
Alignment:RGGGTYYDGATC---
-------AGATCTAC

NRG1/MA0347.1/Jaspar

Match Rank:10
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------RGGGTYYDGATC-
CTAGATCAGGGTCCATCGCA