Information for 1-ATGRKTTGTTKT (Motif 2)


Reverse Opposite:

p-value:1e-2
log p-value:-5.948e+00
Information Content per bp:1.599
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.70%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif1.55%
Average Position of motif in Targets11.8 +/- 4.2bp
Average Position of motif in Background12.6 +/- 4.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HCM1/MA0317.1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ATGRKTTGTTKT-
-----TTGTTTAT

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATGRKTTGTTKT-
NNATNAATTGTTTNN

pan/dmmpmm(Down)/fly

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:ATGRKTTGTTKT-
------TGTTTTT

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATGRKTTGTTKT-----
-NNTTTTGTTTTGATNT

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATGRKTTGTTKT------
-NNCTTTGTTTTGNTNNN

MYF6/MA0667.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATGRKTTGTTKT
AACAGCTGTT--

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATGRKTTGTTKT---
GTATCTATTGTTCTTTA

AZF1/MA0277.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ATGRKTTGTTKT-
----TTTCTTTTT

Aef1/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:ATGRKTTGTTKT
-----TTGTTG-

SPT23/SPT23_YPD/[](Harbison)/Yeast

Match Rank:10
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:ATGRKTTGTTKT-
-----TTGATTTC