Information for 2-CGGCGWCCGGGG (Motif 7)


Reverse Opposite:

p-value:1e-2
log p-value:-5.627e+00
Information Content per bp:1.712
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets11.1 +/- 4.0bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGGCGWCCGGGG--
-TGCCCTNAGGGCA

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGGCGWCCGGGG--
-TGCCCTGAGGGCA

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGGCGWCCGGGG--
-TGCCCTNAGGGCA

NHP10/MA0344.1/Jaspar

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CGGCGWCCGGGG-
-----GCCGGGGA

ERF069/MA0997.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CGGCGWCCGGGG
NGGCGGCGN------

ERF11/MA1001.1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGWCCGGGG
NTGNCGGCGN------

ERF8/MA0994.1/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CGGCGWCCGGGG
NNTGGCGGCG-------

ERF112/MA1002.1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGGCGWCCGGGG
TGGCGGCGGN-----

ERF7/MA0993.1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGGCGWCCGGGG
NNTGGCGGCG-------

REI1/MA0364.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CGGCGWCCGGGG
-----TCAGGGG