Information for 1-ACCAGA (Motif 6)


Reverse Opposite:

p-value:1e-2
log p-value:-5.773e+00
Information Content per bp:1.732
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif8.72%
Number of Background Sequences with motif18.8
Percentage of Background Sequences with motif4.24%
Average Position of motif in Targets11.7 +/- 4.9bp
Average Position of motif in Background12.8 +/- 5.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--ACCAGA--
ATGCCAGACN

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ACCAGA-------
CAAATCCAGACATCACA

ACE2/ACE2_YPD/2-SWI5(Harbison)/Yeast

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ACCAGA-
ACCAGCA

grh/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ACCAGA
AACCAG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ACCAGA---
-CCAGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ACCAGA-----
-CCAGACRSVB

sma-4/MA0925.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ACCAGA----
NNCCAGACANN

grh/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ACCAGA--
AGCAGGTA

grh/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ACCAGA
AAACCAG-

SWI5/MA0402.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACCAGA-
AACCAGCA