Information for 3-GCGCSCAG (Motif 5)


Reverse Opposite:

p-value:1e-2
log p-value:-6.035e+00
Information Content per bp:1.638
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif5.15%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif1.80%
Average Position of motif in Targets11.9 +/- 3.5bp
Average Position of motif in Background12.8 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:GCGCSCAG---
-TGCCCAGNHW

SKN7(MacIsaac)/Yeast

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCGCSCAG-
-GGCCCGGA

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCGCSCAG
TAGCGCGC--

abi4/MA0123.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCGCSCAG
GGGGGCACCG

ABI4(2)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCGCSCAG
GGNNGCACCG

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCGCSCAG-----
GCCGCGCAGTGCGT

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GCGCSCAG-
---CACAGN

RSC3/MA0374.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCGCSCAG
-CGCGCGG

PCF/Arabidopsis-Promoters/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCGCSCAG----
NHHARGCCCAWWWNN

Med/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCGCSCAG-
CACGCGCAGC