Information for 2-AGACCTTK (Motif 4)


Reverse Opposite:

p-value:1e-2
log p-value:-6.189e+00
Information Content per bp:1.736
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif5.59%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif1.97%
Average Position of motif in Targets11.1 +/- 3.4bp
Average Position of motif in Background10.6 +/- 4.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Kr/MA0452.2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGACCTTK---
TTTAACCCTTTTTC

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGACCTTK--
TGACCTTGAN

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGACCTTK----
TGACCTTTNCNT

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGACCTTK-
NTGACCTTGA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGACCTTK--
TGACCTTGAV

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----AGACCTTK----
NNNNATGACCTTGANTN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----AGACCTTK----
NNNNTGACCTTTNNNN

Kr/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGACCTTK
TAACCCTTT

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGACCTTK-
ATGACCTTGA

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AGACCTTK
CNAGGCCT--