Information for 1-AAATBCAG (Motif 3)


Reverse Opposite:

p-value:1e-2
log p-value:-6.717e+00
Information Content per bp:1.718
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif4.25%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets10.5 +/- 3.4bp
Average Position of motif in Background10.4 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CST6(MacIsaac)/Yeast

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-AAATBCAG
NAAATGCA-

SPT23/MA0388.1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AAATBCAG
GAAATCAA-

SPT23/SPT23_YPD/[](Harbison)/Yeast

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AAATBCAG
GAAATCAA-

SPT23(MacIsaac)/Yeast

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AAATBCAG
GAAATCAA-

eve/dmmpmm(Down)/fly

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AAATBCAG
AAATNAT-

tll/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AAATBCAG
AAATTAA-

onecut/MA0235.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AAATBCAG
AAATCAA-

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAATBCAG
TAATCCCN

SUM1/MA0398.1/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AAATBCAG
AAAAATTTT-

sd/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AAATBCAG
ANAAATNCA-