Information for 1-AVYTGCAGAGCA (Motif 2)


Reverse Opposite:

p-value:1e-3
log p-value:-7.361e+00
Information Content per bp:1.617
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif5.37%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets10.5 +/- 3.6bp
Average Position of motif in Background11.4 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AVYTGCAGAGCA-----
AATCGCACTGCATTCCG

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AVYTGCAGAGCA-----
--GAGCACAGCAGGACA

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AVYTGCAGAGCA-----
--CCACACAGCAGGAGA

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AVYTGCAGAGCA-----
-----CACAGCAGGGGG

MET28/MA0332.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AVYTGCAGAGCA
----CCACAG--

MET28(MacIsaac)/Yeast

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AVYTGCAGAGCA
----CCACAG--

PHD1/MA0355.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AVYTGCAGAGCA
ACCTGCAGCA--

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:8
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AVYTGCAGAGCA
-----CAGATCA

SOK2/MA0385.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AVYTGCAGAGCA
ACCTGCAGGCA-

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AVYTGCAGAGCA-----
--CCACACAGCAGGAGA