Information for 3-GCTGAACCTG (Motif 12)


Reverse Opposite:

p-value:1e-1
log p-value:-3.460e+00
Information Content per bp:1.823
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets11.4 +/- 3.7bp
Average Position of motif in Background5.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCTGAACCTG
CGCGCTGAGCN--

CDC5/MA0579.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCTGAACCTG
CGCGCTGAGCN--

SWI5/Literature(Harbison)/Yeast

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCTGAACCTG
GGCTGA-----

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCTGAACCTG
AATTTGCTGAC----

MAFK/MA0496.1/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGAACCTG
AAANTGCTGACTNAG

MAFF/MA0495.1/Jaspar

Match Rank:6
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------GCTGAACCTG-
NAAAANTGCTGACTCAGC

RDR1/MA0360.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTGAACCTG
TGCGGAAC---

Hr46/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCTGAACCTG
--TGACCC--

OPI1/MA0349.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCTGAACCTG
--CGAACCG-

TBS1/MA0404.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCTGAACCTG
-CGGATCCG-