Information for 4-CCTTGACA (Motif 8)


Reverse Opposite:

p-value:1e-2
log p-value:-5.768e+00
Information Content per bp:1.643
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif4.02%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets11.6 +/- 3.3bp
Average Position of motif in Background13.1 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CCTTGACA-
--TTGACAG

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CCTTGACA--
--TTGACAGG

vis/MA0252.1/Jaspar

Match Rank:3
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CCTTGACA-
---TGACAG

TOS8/MA0408.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CCTTGACA-
-TTTGACAG

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGACA-
TGACCTTGACCT

RIM101/Literature(Harbison)/Yeast

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCTTGACA
-CTTGGCA

RIM101(MacIsaac)/Yeast

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CCTTGACA
-CTTGGCA

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCTTGACA
NCGTGACN

Hth/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCTTGACA--
CTNTGACAGN

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CCTTGACA--
--TTGACAGC