Information for 3-GCTCTCGC (Motif 6)


Reverse Opposite:

p-value:1e-2
log p-value:-6.438e+00
Information Content per bp:1.694
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif7.40%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif3.07%
Average Position of motif in Targets11.1 +/- 3.9bp
Average Position of motif in Background9.4 +/- 4.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GCTCTCGC
NGCTN----

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GCTCTCGC
TTGCTCTCTC

Trl/MA0205.1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GCTCTCGC
TTGCTCTCTC

Adf1/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTCTCGC----
GCTCCCGCCGCN

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTCTCGC
GCTCCG--

Adf1/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCTCTCGC
CGCGGTCG-

POL011.1_XCPE1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCTCTCGC--
GGTCCCGCCC

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTCTCGC---
GGCTCYAKCAYC

EGR3/MA0732.1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCTCTCGC---
CTACGCCCACGCACT

EGR2/MA0472.2/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCTCTCGC-
ACGCCCACGCA