Information for 2-GGGCCCAC (Motif 5)


Reverse Opposite:

p-value:1e-2
log p-value:-6.790e+00
Information Content per bp:1.811
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets10.7 +/- 2.4bp
Average Position of motif in Background12.0 +/- 4.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TCP23/MA1066.1/Jaspar

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GGGCCCAC
GGGCCCAC

OsI_08196/MA1050.1/Jaspar

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GGGCCCAC
GGGCCCAC

TCP15/MA1062.1/Jaspar

Match Rank:3
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GGGCCCAC
GGGCCCAC

TCP20/MA1065.1/Jaspar

Match Rank:4
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GGGCCCAC--
GGGCCCACCA

PCF2(TCP)/Oryza sativa/AthaMap

Match Rank:5
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GGGCCCAC
TGGGGCCCAC

Glyma19g26560.1/MA1019.1/Jaspar

Match Rank:6
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GGGCCCAC
GGGGCCCAC

ARALYDRAFT_493022/MA1097.1/Jaspar

Match Rank:7
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGGCCCAC
GGGCCCAC

TCP19/MA1063.1/Jaspar

Match Rank:8
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GGGCCCAC
TGGGGCCCAC

ARALYDRAFT_495258/MA1095.1/Jaspar

Match Rank:9
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GGGCCCAC
GGCCCCAC

ARALYDRAFT_484486/MA1098.1/Jaspar

Match Rank:10
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GGGCCCAC
GGCCCCAC