Information for 2-GCTYCYCAMAGT (Motif 4)


Reverse Opposite:

p-value:1e-2
log p-value:-6.790e+00
Information Content per bp:1.592
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets9.4 +/- 3.8bp
Average Position of motif in Background8.7 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

snpc-4/MA0544.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTYCYCAMAGT
AGCGGCCGACAC-

MET4(MacIsaac)/Yeast

Match Rank:2
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCTYCYCAMAGT-
-----CCACAGTT

MET28/MA0332.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCTYCYCAMAGT
-----CCACAG-

MET28(MacIsaac)/Yeast

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCTYCYCAMAGT
-----CCACAG-

MET31/Literature(Harbison)/Yeast

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCTYCYCAMAGT--
-----CCACAGTTT

MET32/Literature(Harbison)/Yeast

Match Rank:6
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCTYCYCAMAGT--
-----CCACAGTTT

Su(H)/MA0085.1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCTYCYCAMAGT
ATCTCGGTTCCCACAN-

MET4/MA0335.1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCTYCYCAMAGT-
-----CCACAGTT

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTYCYCAMAGT
GCTCCG------

MET4/MET4_SM/[](Harbison)/Yeast

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCTYCYCAMAGT--
GGCGCCACANTTTTT