Information for 1-CCCMCYSYCCBC (Motif 2)


Reverse Opposite:

p-value:1e-3
log p-value:-7.835e+00
Information Content per bp:1.516
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif9.73%
Number of Background Sequences with motif19.9
Percentage of Background Sequences with motif4.23%
Average Position of motif in Targets10.2 +/- 3.3bp
Average Position of motif in Background10.4 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: polyC-repeat

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCCMCYSYCCBC
CCCCCCCCCC--

PB0097.1_Zfp281_1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCCMCYSYCCBC
TCCCCCCCCCCCCCC

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCCMCYSYCCBC
-CCCCCCCC---

SP2/MA0516.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCCMCYSYCCBC--
GCCCCGCCCCCTCCC

KLF5/MA0599.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCCMCYSYCCBC
GCCCCGCCCC--

SP1/MA0079.3/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCCMCYSYCCBC
GCCCCGCCCCC--

EGR1/MA0162.2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCCMCYSYCCBC-
CCCCCGCCCCCGCC

SUT1/SUT1_YPD/[](Harbison)/Yeast

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCCMCYSYCCBC
--CCGGCCCCGC

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCMCYSYCCBC
GGCCCCGCCCCC--

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCCMCYSYCCBC
--CACCGCCCCC