Information for 4-GGCAMT (Motif 14)


Reverse Opposite:

p-value:1e-1
log p-value:-3.369e+00
Information Content per bp:1.837
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.44%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif2.30%
Average Position of motif in Targets10.3 +/- 4.5bp
Average Position of motif in Background10.6 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PHD1(MacIsaac)/Yeast

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GGCAMT
AGGCAC-

SKN7/MA0381.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGCAMT
GGCCAT

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----GGCAMT
NGTGGGCAT-

SOK2(MacIsaac)/Yeast

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GGCAMT
GCAGGCAA-

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GGCAMT
NTTGGCANN

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GGCAMT
TNNGGGCAG-

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GGCAMT
NNTTGGCANN

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GGCAMT
GGTTGGCAT-

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGCAMT
TTGGCA--

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGCAMT---
AAGGCAAGTGT