Information for 4-GAKRNBNWSHWT (Motif 10)


Reverse Opposite:

p-value:1e-2
log p-value:-5.626e+00
Information Content per bp:1.381
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets11.0 +/- 2.5bp
Average Position of motif in Background12.0 +/- 1.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GLN3/MA0307.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAKRNBNWSHWT
GATAA-------

Optix/MA0199.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAKRNBNWSHWT
TGATA--------

LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAKRNBNWSHWT
AGATATTTHT---

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------GAKRNBNWSHWT-
NNNNNBAGATAWYATCTVHN

Optix/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GAKRNBNWSHWT
AAGTGATAAA------

GATA5/MA0766.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAKRNBNWSHWT
AGATAAGA-----

GZF3/MA0309.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAKRNBNWSHWT
TGATAAGA-----

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAKRNBNWSHWT
TNNNATGATTTCNNCNN-

DAL80/Literature(Harbison)/Yeast

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAKRNBNWSHWT
GATAA-------

DAL80(MacIsaac)/Yeast

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAKRNBNWSHWT
GATAA-------