Information for 1-GACTCTGAGT (Motif 1)


Reverse Opposite:

p-value:1e-3
log p-value:-8.350e+00
Information Content per bp:1.759
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets11.5 +/- 2.2bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GACTCTGAGT-
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GACTCTGAGT-
CGCGCTGAGCN

BAS1/MA0278.1/Jaspar

Match Rank:3
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------GACTCTGAGT----
TTNANTTGACTCNGGCTGTGC

ARG80(MacIsaac)/Yeast

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GACTCTGAGT
AGACGC-----

ARG80/MA0271.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GACTCTGAGT
AGACGC-----

z/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GACTCTGAGT-
-----TGAGTG

ARG81/MA0272.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GACTCTGAGT
GTGACTCT----

ARG81(MacIsaac)/Yeast

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GACTCTGAGT
GTGACTCN----

BAS1/BAS1_SM/2-BAS1(Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GACTCTGAGT
TGACTC-----

Ap1/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GACTCTGAGT---
----CTGAGTCAC