Information for 2-CTTCGA (Motif 8)


Reverse Opposite:

p-value:1e-2
log p-value:-5.312e+00
Information Content per bp:1.767
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif3.81%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif1.23%
Average Position of motif in Targets11.3 +/- 4.0bp
Average Position of motif in Background11.5 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

XBP1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CTTCGA-
CTTCGAG

YER051W(MacIsaac)/Yeast

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTTCGA-
-TTCGAA

pan/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CTTCGA-
CTTTGAT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CTTCGA---
CCTTTGATGT

XBP1/MA0414.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTTCGA-
NCTCGAG

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTTCGA
GCTTCC-

TCF7L2/MA0523.1/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTTCGA-----
TNCCTTTGATCTTN

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTTCGA---
TNCCTTTGATGT

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CTTCGA------
ATTTCCTTTGATCTATA

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----CTTCGA------
NNTTCCTTTGATCTANA