Information for 3-CAATGTCC (Motif 7)


Reverse Opposite:

p-value:1e-2
log p-value:-5.650e+00
Information Content per bp:1.844
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets11.8 +/- 3.3bp
Average Position of motif in Background11.6 +/- 7.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

pho/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAATGTCC
-AATGGC-

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAATGTCC
CTCATTGTC-

ttk/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAATGTCC----
CAAGGTCCTGGC

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAATGTCC-
--NTGTCAN

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAATGTCC--
AGGTCANTGACCTN

hth/MA0227.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAATGTCC
--CTGTCA

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CAATGTCC-----
GGCAAAAGTCCAATAA

YRM1/MA0438.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAATGTCC--
--ATTTCCGT

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAATGTCC---
---TGTCANYT

Vis/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAATGTCC---
-NCTGTCANNT