Information for 2-RNTGGAAATGAA (Motif 5)


Reverse Opposite:

p-value:1e-2
log p-value:-6.267e+00
Information Content per bp:1.657
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets8.7 +/- 2.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:1
Score:0.77
Offset:3
Orientation:forward strand
Alignment:RNTGGAAATGAA---
---GGAAGTGAAAST

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.77
Offset:2
Orientation:forward strand
Alignment:RNTGGAAATGAA
--TGGAACAGMA

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.76
Offset:2
Orientation:forward strand
Alignment:RNTGGAAATGAA--
--CGGAAGTGAAAC

NFATC2/MA0152.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:RNTGGAAATGAA
--TGGAAAA---

CST6(MacIsaac)/Yeast

Match Rank:5
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:RNTGGAAATGAA
----NAAATGCA

NFATC1/MA0624.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:RNTGGAAATGAA
NNTGGAAANN--

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:RNTGGAAATGAA
NATGGAAAAN--

NFATC3/MA0625.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:RNTGGAAATGAA
AATGGAAAAT--

SPT23/SPT23_YPD/[](Harbison)/Yeast

Match Rank:9
Score:0.70
Offset:4
Orientation:forward strand
Alignment:RNTGGAAATGAA
----GAAATCAA

SPT23(MacIsaac)/Yeast

Match Rank:10
Score:0.70
Offset:4
Orientation:forward strand
Alignment:RNTGGAAATGAA
----GAAATCAA