Information for 2-CAGGCGCA (Motif 4)


Reverse Opposite:

p-value:1e-2
log p-value:-6.386e+00
Information Content per bp:1.620
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif5.71%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets10.4 +/- 3.9bp
Average Position of motif in Background8.6 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Med/dmmpmm(SeSiMCMC)/fly

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CAGGCGCA--
CACGCGCAGC

sna/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CAGGCGCA-
NNAACAGGTGCAN

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:3
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCGCA
GNNTCAGGTGAN

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:4
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCGCA
GNNTCAGGTGAN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----CAGGCGCA----
ATCCACAGGTGCGAAAA

esg/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CAGGCGCA-
NNACAGGTGCNN

brk/dmmpmm(Down)/fly

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAGGCGCA
CCGGCGCT

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CAGGCGCA--
AGCAACAGCCGCACC

TCF4/MA0830.1/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCGCA
NNCAGGTGCG

ID4/MA0824.1/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCGCA
GACAGGTGTN