Information for 1-CCCAGTGA (Motif 3)


Reverse Opposite:

p-value:1e-3
log p-value:-8.375e+00
Information Content per bp:1.605
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif5.07%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets10.9 +/- 3.0bp
Average Position of motif in Background10.3 +/- 3.7bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0195.1_Zbtb3_2/Jaspar

Match Rank:1
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CCCAGTGA---
NNNNTGCCAGTGATTG

eyg/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CCCAGTGA------
NCNNACTCAGTGANTACTC

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGTGA
TGCCCAGNHW

HAP2(MacIsaac)/Yeast

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCCAGTGA-
-CCAATGAG

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCCAGTGA-----
TGACCCAGTGACCTAC

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTGA-
GTCCCCAGGGGA

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCCAGTGA
ACTAGCCAATCA

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCAGTGA
NGTCCCNNGGGA

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCCAGTGA--
--NCGTGACN

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCCAGTGA--
NCACGTGACN