Information for 5-GGATGCTA (Motif 17)


Reverse Opposite:

p-value:1e0
log p-value:-1.937e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets11.5 +/- 2.6bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX1/MA0365.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGATGCTA
GGTTGCCA

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGATGCTA-----
NNCGTTGCTATGGNN

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGATGCTA-----
NCCGTTGCTANGNGN

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------GGATGCTA---------
NTNNNNNGTTGCTANGGNNCANA

YAP5/MA0417.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGATGCTA
--ATGCTT

YAP5(MacIsaac)/Yeast

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GGATGCTA
--ATGCTT

GCR2/MA0305.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGATGCTA
NGGAAGC--

GCR2(MacIsaac)/Yeast

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGATGCTA
NGGAAGC--

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGATGCTA-----
-TATGCWAATBAV

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGATGCTA
GGGTGC--