Information for 5-CGCCMSAAGCCC (Motif 15)


Reverse Opposite:

p-value:1e-1
log p-value:-2.652e+00
Information Content per bp:1.688
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets12.2 +/- 2.6bp
Average Position of motif in Background10.3 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGCCMSAAGCCC
TGCCCCCGGGCA

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGCCMSAAGCCC
ATTTCCCAGVAKSCY

TFAP2B/MA0811.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCCMSAAGCCC
TGCCCCAGGGCA

TFAP2C/MA0524.2/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGCCMSAAGCCC
TGCCCCAGGGCA

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGCCMSAAGCCC
CTGCCCGCA----

che-1/MA0260.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CGCCMSAAGCCC
-----GAAACC-

MA0260.1_che-1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CGCCMSAAGCCC
-----GAAACC-

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGCCMSAAGCCC-
TTGCCCTAGGGCAT

CRZ1/MA0285.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGCCMSAAGCCC-
----CTAAGCCAC

TFAP2A/MA0003.3/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGCCMSAAGCCC
CGCCTCAGGCA-