Information for 5-CNKGTCTBNB (Motif 13)


Reverse Opposite:

p-value:1e-1
log p-value:-3.471e+00
Information Content per bp:1.341
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets11.6 +/- 4.2bp
Average Position of motif in Background16.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CNKGTCTBNB
VBSYGTCTGG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CNKGTCTBNB
-CTGTCTGG-

ARG80(MacIsaac)/Yeast

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CNKGTCTBNB
-GCGTCT---

ARG80/MA0271.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CNKGTCTBNB
-GCGTCT---

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CNKGTCTBNB----
--TGTCTGDCACCT

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CNKGTCTBNB-
CTTGTCTCCCA

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CNKGTCTBNB----
-CTGTCTGTCACCT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CNKGTCTBNB
-TWGTCTGV-

Trl/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CNKGTCTBNB
TTGCTCTCTC

Trl/MA0205.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CNKGTCTBNB
TTGCTCTCTC