Information for 3-CTCTGTCCTC (Motif 10)


Reverse Opposite:

p-value:1e-2
log p-value:-5.079e+00
Information Content per bp:1.715
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets10.7 +/- 3.4bp
Average Position of motif in Background10.7 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGTCCTC-
TGACCTCTGACCCCN

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGTCCTC
TGACCTTTGACCTC

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTCTGTCCTC--
--CNGTCCTCCC

MAC1/MA0326.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTCTGTCCTC-
---TTTGCTCA

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTCTGTCCTC-
----GTCCTAA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTCTGTCCTC--
--CTGACCTTTG

MAC1/Literature(Harbison)/Yeast

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTCTGTCCTC
---TTTGCTC

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGTCCTC
TGACCTTTGCCCTA

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTCTGTCCTC--
WCATTTTGKCCTCYT

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCTGTCCTC
CTCTCTCY--