Information for 5-CGTGCGTAGC (Motif 8)


Reverse Opposite:

p-value:1e0
log p-value:-1.934e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets485.8 +/- 256.2bp
Average Position of motif in Background355.4 +/- 137.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PHO2/PHO2_H2O2Hi/[](Harbison)/Yeast

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGTGCGTAGC-
CGTGCGGTGCG

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGTAGC
RTACGTGC-----

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGTAGC
GGACGTGC-----

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CGTGCGTAGC--
GGGCCGTGTGCAAAAA

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGTAGC
TACGTGCV----

OsbHLH66(bHLH)/Oryza sativa/AthaMap

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CGTGCGTAGC
GAGCACGTGCGCA--

vvl/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CGTGCGTAGC
--TGCATA--

MA0254.1_vvl/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGTGCGTAGC
--TGCATA--

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCGTAGC
TTGCGTGCVA---

PL0008.1_hlh-29/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCGTAGC--
TNNGCCACGCGTGNNNN