Information for 3-GCGTAAAATG (Motif 7)


Reverse Opposite:

p-value:1e0
log p-value:-1.934e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets417.7 +/- 230.7bp
Average Position of motif in Background422.8 +/- 196.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GCGTAAAATG--
CAAGGTCGTAAAATCTT

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GCGTAAAATG-
AAACCTCGTAAAATTT

croc/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCGTAAAATG
--ATAAAA--

PH0076.1_Hoxd11/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCGTAAAATG--
TAAGGTCGTAAAATCCT

CST6(MacIsaac)/Yeast

Match Rank:5
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GCGTAAAATG--
----NAAATGCA

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GCGTAAAATG-
AAAGCTCGTAAAATTT

gt/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCGTAAAATG
---TAAAAA-

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCGTAAAATG-
TAAAGTCGTAAAATAG

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCGTAAAATG-
TAAAGTCGTAAAACGT

cad/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCGTAAAATG
GCATAAA---