Information for 2-GCTGCCGCTGTG (Motif 4)


Reverse Opposite:

p-value:1e-1
log p-value:-2.617e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.03%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets536.8 +/- 254.4bp
Average Position of motif in Background682.2 +/- 160.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Adf1/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTGCCGCTGTG
GCTCCCGCCGCN

Med/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCTGCCGCTGTG
ACTGCGCCTG--

MA0522.1_Tcf3/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCTGCCGCTGTG
-NTGCAGCTGTG

SeqBias: GCW-triplet

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCCGCTGTG
AGCAGCAGCAGC-

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GCTGCCGCTGTG
------GCTGTG

MA0521.1_Tcf12/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCTGCCGCTGTG
-NNGCAGCTGTT

MA0500.1_Myog/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTGCCGCTGTG
-NNGCAGCTGTC

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTGCCGCTGTG---
NNTCCTGCTGTGNNN

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCTGCCGCTGTG
-CAGCAGCTGN-

MA0410.1_UGA3/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTGCCGCTGTG
--TCCCGCCG--