Information for 1-GAATCCGGGTGC (Motif 3)


Reverse Opposite:

p-value:1e-1
log p-value:-2.827e+00
Information Content per bp:1.911
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.04%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets668.5 +/- 275.7bp
Average Position of motif in Background834.6 +/- 121.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0077.1_Spdef_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GAATCCGGGTGC--
AANNATCCGGATGTNN

YDR026C(MacIsaac)/Yeast

Match Rank:2
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:GAATCCGGGTGC
----CCGGGT--

AFT2(MacIsaac)/Yeast

Match Rank:3
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:GAATCCGGGTGC-
------GGGTGCA

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:4
Score:0.70
Offset:6
Orientation:forward strand
Alignment:GAATCCGGGTGC
------GGGTGC

RCS1(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:GAATCCGGGTGC-
------GGGTGCA

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:6
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GAATCCGGGTGC---
------GGGTGCANT

MA0269.1_AFT1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAATCCGGGTGC---------
CNANNCGGGTGCAATATNNNA

MA0280.1_CAT8/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAATCCGGGTGC
--NTCCGG----

MA0323.1_IXR1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAATCCGGGTGC----
-AAGCCGGAAGCGGGG

IXR1(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAATCCGGGTGC----
-AAGCCGGAAGCGGGG