Information for 2-CCGTGATATA (Motif 2)


Reverse Opposite:

p-value:1e-1
log p-value:-3.466e+00
Information Content per bp:1.973
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets556.0 +/- 273.0bp
Average Position of motif in Background658.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0379.1_SIG1/Jaspar

Match Rank:1
Score:0.71
Offset:5
Orientation:forward strand
Alignment:CCGTGATATA
-----ATATA

Optix/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCGTGATATA
ANGTGATA--

MA0199.1_Optix/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CCGTGATATA
---TGATA--

Optix/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCGTGATATA
AAGTGATAAA

STB5/STB5_YPD/[](Harbison)/Yeast

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCGTGATATA
CGGTGTTATA

STB5(MacIsaac)/Yeast

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCGTGATATA
CGGTGTTATA

MA0246.1_so/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCGTGATATA
---TGATAC-

So/dmmpmm(Noyes_hd)/fly

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCGTGATATA
TAATGATACG

TATA-box/SacCer-Promoters/Homer

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CCGTGATATA----
----TATATAWDVV

MA0067.1_Pax2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCGTGATATA
NCGTGACN--