Information for 4-TTGTACGA (Motif 12)


Reverse Opposite:

p-value:1e0
log p-value:-1.030e+00
Information Content per bp:1.530
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif57.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets490.3 +/- 272.0bp
Average Position of motif in Background502.1 +/- 276.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0553.1_SMZ/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:TTGTACGA--
--GTACGAGG

MA0411.1_UPC2/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TTGTACGA
-TATACGA

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TTGTACGA-----
NNNATTTTACGACNNTN

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TTGTACGA-----
ANATTTTACGAGNNNN

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTGTACGA-----
ANNATTTTACGACNTNA

AtSPL3(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTGTACGA----
NAANNNGTACGGNAAN

MA0577.1_AtSPL3/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTGTACGA----
NAANNNGTACGGNAAN

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTGTACGA-----
GNNNTTTTACGACCTNA

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTGTACGA-----
NNGTTTTACGACTTTA

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTGTACGA-----
NNNTTTTACGACNTTN