Information for 1-AAGATGCGTA (Motif 1)


Reverse Opposite:

p-value:1e-1
log p-value:-3.466e+00
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets380.2 +/- 238.9bp
Average Position of motif in Background618.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

DAL82(MacIsaac)/Yeast

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AAGATGCGTA
AAANTTGCGC-

MBP1(MacIsaac)/Yeast

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAGATGCGTA
--GACGCGT-

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAGATGCGTA
--GACGCGT-

PL0008.1_hlh-29/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AAGATGCGTA----
TNNGCCACGCGTGNNNN

MA0121.1_ARR10/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAGATGCGTA
-AGATCCGC-

TEIL(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAGATGCGTA
-AGGTACAT-

ARR10(GARP)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AAGATGCGTA
GCGAAGATCCGC-

vvl/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AAGATGCGTA
----TGCATA

MA0254.1_vvl/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AAGATGCGTA
----TGCATA

Tal1

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAGATGCGTA
CAGATG----