Information for 3-CGTACAGTCT (Motif 8)


Reverse Opposite:

p-value:1e-1
log p-value:-2.387e+00
Information Content per bp:1.530
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif19.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets1065.3 +/- 637.3bp
Average Position of motif in Background1121.2 +/- 632.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AtSPL3(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CGTACAGTCT-
ATAGCCGTACAATTTC

MA0577.1_AtSPL3/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CGTACAGTCT-
ATAGCCGTACAATTTC

SPL14(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:3
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CGTACAGTCT--
TCGCGTCCGTACAGGAGGG

MA0586.1_SPL14/Jaspar

Match Rank:4
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CGTACAGTCT--
TCGCGTCCGTACAGGAGGG

YML081W(MacIsaac)/Yeast

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CGTACAGTCT---
---CCAGTCTGAA

FHL1(MacIsaac)/Yeast

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGTACAGTCT
ATCCGTACAT---

TEC1(MacIsaac)/Yeast

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CGTACAGTCT
--CACATTCT

AtSPL8(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CGTACAGTCT-
TTTTATGTACCTTATT

MA0578.1_AtSPL8/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CGTACAGTCT-
TTTTATGTACCTTATT

SFP1/SFP1_SM/50-RAP1(Harbison)/Yeast

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGTACAGTCT
ACCCGTACAT---