Information for 2-TTACGAGCCG (Motif 7)


Reverse Opposite:

p-value:1e-1
log p-value:-2.410e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets1328.9 +/- 427.2bp
Average Position of motif in Background1140.4 +/- 428.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGAGCCG-
ANATTTTACGAGNNNN

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGAGCCG-
NAATTTTACGAGNTNN

PH0067.1_Hoxc12/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------TTACGAGCCG-
GNNNTTTTACGACCTNA

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------TTACGAGCCG-
NNNATTTTACGACNNTN

MA0282.1_CEP3/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTACGAGCCG
TTTCCGAG---

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTACGAGCCG
-TACGTGCV-

MA0411.1_UPC2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTACGAGCCG
TATACGA----

MA0394.1_STP1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TTACGAGCCG--
----GCGCCGCA

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TTACGAGCCG-
ANNATTTTACGACNTNA

MA0391.1_STB4/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTACGAGCCG
TTCCGAG---