Information for 1-GTTGTACGAC (Motif 6)


Reverse Opposite:

p-value:1e-1
log p-value:-2.906e+00
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets1042.6 +/- 672.9bp
Average Position of motif in Background878.4 +/- 635.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0047.1_Hoxa11/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GTTGTACGAC----
NNGTTTTACGACTTTA

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GTTGTACGAC----
ANNTTTTACGACNTNN

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTACGAC----
NNNATTTTACGACNNTN

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GTTGTACGAC----
NNNTTTTACGACNTTN

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTACGAC----
ANNATTTTACGACNTNA

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTACGAC----
GNNNTTTTACGACCTNA

MA0553.1_SMZ/Jaspar

Match Rank:7
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GTTGTACGAC-
---GTACGAGG

MA0411.1_UPC2/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GTTGTACGAC
--TATACGA-

AtSPL3(SBP)/Arabidopsis thaliana/AthaMap

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTACGAC---
NAANNNGTACGGNAAN

MA0577.1_AtSPL3/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GTTGTACGAC---
NAANNNGTACGGNAAN