Information for 4-TTCCCTTGGACG (Motif 4)


Reverse Opposite:

p-value:1e-2
log p-value:-4.852e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets885.1 +/- 463.3bp
Average Position of motif in Background670.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RME1(MacIsaac)/Yeast

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTCCCTTGGACG
TTCCTTTGGA--

MA0370.1_RME1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTCCCTTGGACG
TTCCTTTGGA--

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTCCCTTGGACG-
NTGCCCTTGGGCGN

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTCCCTTGGACG
TGACCTTGAN--

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTCCCTTGGACG
TGACCTTGAV--

MA0592.1_ESRRA/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTCCCTTGGACG
NGTGACCTTGG---

MA0505.1_Nr5a2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTCCCTTGGACG-
GCTGACCTTGAACTN

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTCCCTTGGACG-
---CCTTTGAWGT

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTCCCTTGGACG-
-TNCCTTTGATGT

MA0141.2_Esrrb/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTCCCTTGGACG
TGACCTTGANNN