Information for 3-GCGCGCTTGGAT (Motif 3)


Reverse Opposite:

p-value:1e-2
log p-value:-4.852e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets1138.4 +/- 460.1bp
Average Position of motif in Background1118.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCGCGCTTGGAT
GCGCGCTA----

EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCGCGCTTGGAT
TRGAGCGCRYTTGCA-

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCGCGCTTGGAT
NTCGCGCGCCTTNNN

LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer

Match Rank:4
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------GCGCGCTTGGAT-
CARTGGAGCGCRYTTGCATT

MA0405.1_TEA1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCGCGCTTGGAT
GCGGACAT----

MA0375.1_RSC30/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCGCGCTTGGAT
CGCGCGCG-----

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCGCGCTTGGAT
GGCGCGCT-----

MA0374.1_RSC3/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGCTTGGAT
NNGCGCG-------

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCGCGCTTGGAT
ANCGCGCGCCCTTNN

nub/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCGCGCTTGGAT--
----GCTTGCATAA