Information for 2-CGCGCGGTCTCA (Motif 2)


Reverse Opposite:

p-value:1e-2
log p-value:-4.852e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets708.9 +/- 444.9bp
Average Position of motif in Background325.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0375.1_RSC30/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGCGCGGTCTCA
CGCGCGCG----

MA0374.1_RSC3/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGCGCGGTCTCA
CGCGCGG-----

Six4/dmmpmm(Noyes_hd)/fly

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CGCGCGGTCTCA---
-----GGTATCAAAT

Adf1/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGCGCGGTCTCA
--CGCGGTCG--

MA0204.1_Six4/Jaspar

Match Rank:5
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CGCGCGGTCTCA
------GTATCA

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGCGCGGTCTCA-----
TNNNNGGTGTCATNTNT

SUT1(MacIsaac)/Yeast

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCGCGGTCTCA
CGCGGGG-----

MA0399.1_SUT1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGCGCGGTCTCA
CGCGGGG-----

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGGTCTCA-
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGGTCTCA-
ANCGCGCGCCCTTNN