Information for 5-TGGKTCGT (Motif 13)


Reverse Opposite:

p-value:1e0
log p-value:-1.058e+00
Information Content per bp:1.908
Number of Target Sequences with motif1965.0
Percentage of Target Sequences with motif4.56%
Number of Background Sequences with motif1940.2
Percentage of Background Sequences with motif4.50%
Average Position of motif in Targets1006.8 +/- 557.6bp
Average Position of motif in Background1006.0 +/- 557.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OPI1(MacIsaac)/Yeast

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGGKTCGT
CGGTTCG-

MA0349.1_OPI1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGGKTCGT
CGGTTCG-

HLHm5/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGGKTCGT--
TGNCNCGTGC

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGGKTCGT--
CGTGGGTGGTCC

h/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGGKTCGT---
TGGCGCGTGNC

MA0411.1_UPC2/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGGKTCGT---
----TCGTATA

PB0027.1_Gmeb1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGKTCGT------
NNNTNGTACGTAANNNN

P(MYB)/Zea mays/AthaMap

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGGKTCGT
CNGGTAGGT

PB0143.1_Klf7_2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGKTCGT------
NNNTNGGGCGTATNNTN

hkb/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGGKTCGT--
-GGGGCGTTA