Information for 3-GCGTAAGT (Motif 11)


Reverse Opposite:

p-value:1e0
log p-value:-1.063e+00
Information Content per bp:1.530
Number of Target Sequences with motif391.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif379.0
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets1013.0 +/- 552.3bp
Average Position of motif in Background1022.3 +/- 549.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GCGTAAGT--
---TAAGTAT

ETS(ETS)/Promoter/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCGTAAGT
AACCGGAAGT

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCGTAAGT
ANCCGGAAGT

STB2(MacIsaac)/Yeast

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCGTAAGT
CGGGTAAN-

bap/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCGTAAGT--
TCTTAAGTGG

MA0211.1_bap/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCGTAAGT-
--TTAAGTG

MA0062.2_GABPA/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCGTAAGT---
CCGGAAGTGGC

PB0058.1_Sfpi1_1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCGTAAGT--
TTAAGAGGAAGTTA

cad/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCGTAAGT
GCATAAA-

PB0011.1_Ehf_1/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCGTAAGT--
AGGACCCGGAAGTAA