Information for 1-CGCTGTCCACAA (Motif 1)


Reverse Opposite:

p-value:1e-2
log p-value:-5.546e+00
Information Content per bp:1.971
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.02%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets902.4 +/- 596.2bp
Average Position of motif in Background389.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGCTGTCCACAA-
-SCTGTCARCACC

MA0130.1_ZNF354C/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGCTGTCCACAA
----ATCCAC--

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGCTGTCCACAA
-GCTGTG-----

HAC1/Literature(Harbison)/Yeast

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGCTGTCCACAA
GACACGCTGGCA----

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGCTGTCCACAA--
--NWAACCACADNN

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CGCTGTCCACAA
AACTAGCTGTCAATAC

Aef1/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CGCTGTCCACAA
------CAACAA

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGCTGTCCACAA----
CAGATGTGCACATACGT

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CGCTGTCCACAA----
TACATGTGCACATAAAA

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGCTGTCCACAA-
NNNCAGCTGTCAATATN