Information for 1-GATCACCG (Motif 9)


Reverse Opposite:

p-value:1e0
log p-value:-1.399e+00
Information Content per bp:1.530
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif83.0
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets517.2 +/- 271.9bp
Average Position of motif in Background515.7 +/- 274.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GATCACCG
CAGATCA---

MA0354.1_PDR8/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GATCACCG-
-ATCTCCGN

MA0348.1_OAF1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GATCACCG-
TATCTCCGA

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GATCACCG----
CATAAGACCACCATTAC

MA0432.1_YNR063W/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GATCACCG-
-ATCTCCGA

ABI4(2)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GATCACCG
GGNNGCACCG

RTG3/Literature(Harbison)/Yeast

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GATCACCG
GGTCAC--

Run/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GATCACCG--
---CACCGCC

MA0434.1_YPR013C/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GATCACCG
NGATCTACA

MA0312.1_HAP1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GATCACCG
TATCTCCG