Information for 5-CTCGCACGAG (Motif 8)


Reverse Opposite:

p-value:1e0
log p-value:-1.935e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.04%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets491.3 +/- 173.4bp
Average Position of motif in Background398.9 +/- 136.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

OsbHLH66(bHLH)/Oryza sativa/AthaMap

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTCGCACGAG---
TNCGCACGTGCNN

MA0553.1_SMZ/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCGCACGAG
CCTCGTAC---

MA0569.1_MYC4/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTCGCACGAG-
---GCACGTGN

HLHm5/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTCGCACGAG---
---GCACGAGACA

MA0549.1_BES1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCGCACGAG---
--CGCACGTGTGA

PL0014.1_mxl-1::mdl-1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCGCACGAG-----
NNTNGCACGTGCTNNA

Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTCGCACGAG--
--AGCACGTGGG

Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTCGCACGAG---
-HCVCACGTGCTT

GFX(?)/Promoter/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCGCACGAG
ATTCTCGCGAGA-

MA0281.1_CBF1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTCGCACGAG-
---GCACGTGA