Information for 3-GAGCATGTCG (Motif 7)


Reverse Opposite:

p-value:1e0
log p-value:-1.935e+00
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.04%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets477.3 +/- 284.4bp
Average Position of motif in Background555.0 +/- 310.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

sna/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGCATGTCG
AAGCAAGTGG

sna/dmmpmm(SeSiMCMC)/fly

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAGCATGTCG
-AGCAAGTGG

INO2/INO2_YPD/1-INO4,2-INO2(Harbison)/Yeast

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GAGCATGTCG
--GCATGTG-

MA0581.1_LEC2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATGTCG
ATGTGCATGNN-

sna/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGCATGTCG
-ANCAGGTGG

MA0564.1_ABI3/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAGCATGTCG
-TGCATGCAG

HAC1/Literature(Harbison)/Yeast

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGCATGTCG
GGACAGCGTGTC-

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGCATGTCG-
ACAGGATGTGGT

MA0321.1_INO2/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGCATGTCG-
--GCATGTGAA

sna/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGCATGTCG
--GCAGGTGG